遇见数据集

De novo assembly of Rhabdomys pumilio transcriptome and detailed differential gene expression results

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DataONE2016-11-03 更新2024-06-26 收录
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This dataset contains a fasta file, including the de novo assembly of Rhabdomys pumilio transcriptome (built from RNA-Seq data using the Trinity suite of de novo transcriptome assembly tools - https://github.com/trinityrnaseq/trinityrnaseq/wiki), as well as a tab separated text file indicating the gene annotations corresponding to each assembly contig, obtained by mapping the de novo assembly to the human reference transcriptome, as described in the manuscript. A third Excel file contains the detailed results of RNA-Seq differential gene expression study in skin obtained from three dorsal regions, as described in the manuscript.

本数据集包含一个FASTA文件,其中收录了四纹鼠(Rhabdomys pumilio)转录组(transcriptome)的从头组装(de novo assembly)结果——该组装基于RNA测序(RNA-Seq)数据,使用转录组从头组装工具套件Trinity完成,工具官方文档地址为https://github.com/trinityrnaseq/trinityrnaseq/wiki。此外,数据集还包含一份制表符分隔文本文件,记录了每条组装重叠群(contig)对应的基因注释信息,该注释通过将上述从头组装序列比对至人类参考转录组(human reference transcriptome)得到,相关细节与本研究论文手稿中的描述一致。本数据集的第三个文件为Excel格式,内含从三个背部区域获取的皮肤组织RNA测序差异基因表达(differential gene expression)研究的详细结果,相关信息同样与本研究论文手稿中的描述一致。

创建时间:
2016-11-03
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