Raw sequenced indexes and phylip alignments for the Seychelles caecilian phylogenomic study.

ddRADseq data from a single 300 cycle NextSeq run using a high-output kit.Raw sequence data with barcodes required to demultiplex. Contains 38 individuals: two Hypogeophis montanus, 3 H. brevis, 5 H. sechellensis and 4 each of H. pti, H. larvatus, H. alternans, H. rostratus, Praslinia cooperi, Gegeneophis ramaswamii and Idiocranium russeli.Phylip format alignments with variable sites only. Filtered for between 0 and 80% maximum missing data per locus, minor allele count of 2, minimum read depth 2 and minimum read quality of 30. Includes the final alignment used in the study with 50% missing data allowed 'filtered_mac2_minq30_missing50_minDP2.varsites.phy'. Contains 37 samples from the caecilian species Hypogeophis montanus, Hypogeophis pti, Hypogeophis brevis, Hypogeophis sechellensis, Hypogeophis larvatus, Hypogeophis rostratus, Hypogeophis alternans, Praslinia cooperi, Gegeneophis ramaswamii and Idiocranium russeli.

ddRADseq 数据集，源自一次使用高输出试剂盒进行的300循环NextSeq运行。包含用于去重混的数据条形码的原始序列数据。该数据集包含38个个体：2个Hypogeophis montanus，3个H. brevis，5个H. sechellensis以及每个物种的4个样本，包括H. pti，H. larvatus，H. alternans，H. rostratus，Praslinia cooperi，Gegeneophis ramaswamii和Idiocranium russeli。仅包含可变位点的Phylip格式比对。经筛选，每个位点的最大缺失数据比例介于0%至80%，等位基因计数为2，最小读取深度为2，最小读取质量为30。包含允许50%缺失数据的最终比对文件'filtered_mac2_minq30_missing50_minDP2.varsites.phy'。此外，还包含来自10种盲鳗物种（Hypogeophis montanus，Hypogeophis pti，Hypogeophis brevis，Hypogeophis sechellensis，Hypogeophis larvatus，Hypogeophis rostratus，Hypogeophis alternans，Praslinia cooperi，Gegeneophis ramaswamii和Idiocranium russeli）的37个样本。