Additional file 2 of The black honey bee genome: insights on specific structural elements and a first step towards pangenomes

Additional file 2. Table S1. Illumina reads downloaded from NCBI SRA project SRP043350. Data from [16]. Table S2. Samples used for analysing the InDel variants. Table S3. Canu assembly statistics. Table S4. Statistics on the BUSCO genes expected to be found in metazoa and hymenoptera. Table S5. Repeats detected by Tandem Repeat Finder at the breakpoints of the 5th contig of chromosome 7. Table S6. Short tandem repeats within 1 kb of chromosome ends. Table S7. Short tandem repeats with > 400 copies. Table S8. Statistics on non-TTAGG Short Tandem Repeats with more than 10 repeat copies. Table S9. Summary statistics for the 91 and 371 bp repeats. Table S10. Inversions detected between AMelMel1.1 and HAv3.1. Table S11. Genotypes of NUMT_Chr2 and NUMT_Chr10 with Graphtyper and by examining local sequencing depth.