Phables v 1.1.0 benchmarking data and results

This record contains all the benchmarking datasets and results for the Phables manuscript. The datasets used are,

A simulated dataset containing four phages Enterobacteria phage P22, Enterobacteria phage T7, Staphylococcus phage SAP13 TA-2022 and Staphylococcus phage SAP2 TA-2022, referred to as simPhage

Water samples from Nansi Lake and Dongping Lake in n Shandong Province, China (NCBI BioProject number PRJNA756429), referred to as Lake Water

Soil samples from flooded paddy fields from Hunan Province, China (NCBI BioProject number PRJNA866269), referred to as Paddy Soil

Wastewater virome (NCBI BioProject number PRJNA434744), referred to as Wastewater

Stool samples from patients with IBD and their healthy household controls (NCBI BioProject number PRJEB7772), referred to as IBD

The simulated dataset was assembled using metaSPAdes and the real datasets were preprocessed using Hecatomb. The Lake Water dataset was also assembled using MEGAHIT (referred to as Lake Water - MEGAHIT) and metaSPAdes (referred to as Lake Water - metaSPAdes). The simulated dataset was run using Phables and evaluated using metaQUAST. All the real datasets were run using PHAMB and Phables and the genomes were evaluated using CheckV.