Interpopulation variation in growth, CTMax and metabolism among seasonal phenologies of Chinook Salmon

# Interpopulation Variation in growth, CTMax and Metabolism among seasonal phenologies of Chinook Salmon --- There are 4 datasets. One that pertains to growth measurements, one that pertains to CTMax data and the third contains data regarding metabolic performance. These first three were used in the 2022 CJFAS paper. The fourth dataset contains metabolic data for small Winter-run Chinook Salmon (2-3g), these data were gathered on the same cohort of fish as those used in the other datasets. These fish were only acclimated to 11C, whereas fish in the other datasets were acclimated to 11, 16, or 20C. The columns and descriptions for these three datasets are below. Only fish used in the analysis for the CJFAS manuscript are included in this data. This excludes fish that did not recover from the metabolic or CTMax trials or fish from other populations that were measured during the same experimental seasons, which leads to gaps in the individual numbering of trial fish ## Column Specs: CJFAS\_2022\_Dryad\_CTM\_Data.csv SEQ: Numerical number, runs from 1 to the end of the dataset, each row gets its own value FISH_NUM: Unique fish identification number, gaps in sequence are due to fish which did not survive recovery, or data from other populations not included in the publication associated with this dataset. HATCHERY: Hatchery identification for each fish, Coleman: Coleman National Fish Hatchery, Winter-Run: Sacramento River Winter-run from Livingston Stone National Fish hatchery, Feather Fall: Feather Fall-run population from the feather river hatchery, Feather Spring: Spring-run population from the Feather River hatchery ACCLIMATION_TEMPERATURE: Temperature at which each fish was acclimated, 11 16 or 20 TANK_ID Rearing tank identity for each fish. As tanks were reused between years the tank ID code is formatted as TANK_POPULATON_YEAR: Population codes are CO: Coleman, WR: Winter-run, FF: Feather Fall and FS: Feather Spring MASS: Fish mass measured in grams STANDARD_LENGTH: Standard length from snout to start of caudal fin, measured in mm. Fish from the Coleman population were not measured for Standard Length and therefore are NA. FORK_LENGTH: Fork length from snout to fork in caudal fin, measured in mm TOTAL_LENGTH: Total length from snout to furthest extremity of caudal fin, measured in mm CONDITION_FACTOR: Fulton's condition factor calculated using the equation K = mass*100/(FL^3) CTM_CHAMBER: Specific CTM chamber that a fish was trialed in, each CTM chamber was assigned a letter identifier, A,B,C,D,E,F or G CTM_DATE: mm/dd/yy of the CTMax Trial AGE_AT_CTMAX: Age of the fish at the CTMax trial (Days) ## Column Specs: CJFAS\_2022\_Dryad\_Growth\_Data.csv SEQ: Numerical number, runs from 1 to the end fo the dataset, each row gets its own value HATCHERY: Hatchery identification for each fish, Coleman: Coleman National Fish Hatchery, Winter-Run: Sacramento River Winter-run from Livingston Stone National Fish hatchery, Feather Fall: Feather Fall-run population from the feather river hatchery, Feather Spring: SPring-run population from the Feather River hatchery ACCLIMATION_TEMPERATURE: Temperature at which each fish was acclimated, 11 16 or 20 TANK_ID: Tank ID as a concatenation of the specific tank code (e.g., I4, E3, H1) and the hatchery a fish came from DATE: Date that a specific fish was measured (mm/dd/yyyy) DAYS: Days into the growth measurement window, starts at 0 YEAR: Year of the growth measurements (2017, 2018 or 2019) MASS: Fish mass measured in grams STANDARD_LENGTH: Standard length from snout to start of caudal fin, measured in mm. Fish from the Coleman population were not measured for Standard Length and therefore are NA. FORK_LENGTH: Fork length from snout to fork in caudal fin, measured in mm TOTAL_LENGTH: Total length from snout to furthest extremity of caudal fin, measured in mm CONDITION_FACTOR: Fulton's condition factor calculated using the equation K = mass*100/(FL^3) ## Column Specs: CJFAS\_2022\_Dryad\_Metabolic\_Dataset.csv SEQ: Numerical number, runs from 1 to the end fo the dataset, each row gets its own value FISH_ID: Unique fish identification number, gaps in sequence are due to fish which did not survive recovery, or data from other populations not included in the publication associated withthis dataset. AS_EXP: Four aerobic scope trials could be conducted at once, one in each swim tunnel. This value keeps track of which trials were conducted concurrently. HATCHERY:Hatchery identification for each fish, Coleman: Coleman National Fish Hatchery, Winter-Run: Sacramento River Winter-run from Livingston Stone National Fish hatchery, Feather Fall: Feather Fall-run population from the feather river hatchery, Feather Spring: SPring-run population from the Feather River hatchery ACCLIMATION_TEMPERATURE:Temperature at which each fish was acclimated, 11 16 or 20 C TEST_TEMPERATURE: Temperature at which metabolic trials were conducted at. (8, 10, 12, 14, 16, 18, 20, 22, 23, 24,25 26C) TANK_ID:Rearing tank identity for each fish. As tanks were reused between years the tank ID code is formatted as TANK_POPULATON_YEAR. Population codes are CO: Coleman, WR: Winter-run, FF: Feather Fall and FS: Feather Spring TUNNEL_ID: Which of four swim tunnels a fish was trialed in. Trials which share a cardinal direction (East vs. West) were connected via a shared sump system and therefore test temperatures of fish trialed in shared systems were the same. RMR: Routine Metabolic Rate (mgO2/kg/hr) MMR: Maximum Metabolic Rate (mgO2/kg/hr) AS: Aerobic Scope (MMR - RMR; mgO2/kg/hr) MASS: Fish mass measured in grams STANDARD_LENGTH: Standard length from snout to start of caudal fin, measured in mm. Fish from the Coleman population were not measured for Standard Length and therefore are NA. FORK_LENGTH: Fork length from snout to fork in caudal fin, measured in mm TOTAL_LENGTH: Total length from snout to furthest extremity of caudal fin, measured in mm CONDITION_FACTOR: Fulton's condition factor (K) calculated using the equation K = mass*100/(FL^3) AGE_AT_TRIAL: Age of the fish at the CTMax trial (Days) ## Column Specs: NOAA\_Preliminary\_Data\_Winter-Run\_Small.csv FISH_ID: Unique fish identification number, gaps in sequence are due to fish which did not survive recovery, or data from other populations not included in the publication associated withthis dataset.\ HATCHERY: Hatchery identification for each fish, there is only one value, Winter-run.\ ACCLIMATION_TEMPERATURE:Temperature at which each fish was acclimated, 11 16 or 20 C\ TEST_TEMPERATURE: Temperature at which metabolic trials were conducted at. (8, 10, 12, 14, 16, 18, 20, 22, 23, 24,25 26C) MASS: Fish mass measured in grams\ STANDARD_LENGTH: Standard length from snout to start of caudal fin, measured in mm. Fish from the Coleman population were not measured for Standard Length and therefore are NA.\ FORK_LENGTH: Fork length from snout to fork in caudal fin, measured in mm\ TOTAL_LENGTH: Total length from snout to furthest extremity of caudal fin, measured in mm\ AS_NUM: Four aerobic scope trials could be conducted at once, one in each swim tunnel. This value keeps track of which trials were conducted concurrently. RMR_DATE: Date of the RMR trial (m/d/y)\ TUNNEL_ID: Which of two 5l Loligo swim tunnels a fish was trialed in.\ RMR: Routine Metabolic Rate (mgO2/kg/hr)\ MMR: Maximum Metabolic Rate (mgO2/kg/hr)\ AS: Aerobic Scope (MMR - RMR; mgO2/kg/hr) EXP_YEAR: Calendar year when the trial was conducted (only value is 2018) LOCATION: Location of source population (only value is CA)\ LAT: Latitude of source population (only value is 40.7162) LONG: Longitude of source population (only value is -122.425 ELEVATION: Elevation of source population (only value is 179, meters) MIGRATION: Distance of source population from San Fancisco Delta (only value is 307.4, miles)\ AGE_AT_TEST: Age of the fish at the Metabolic trial (Days) ## Sharing/access Information Contact Ken Zillig for questions about this data.# 奇努克鲑（Chinook Salmon）季节性物候类群间生长、临界高温（CTMax）与代谢的种群间差异 —— 本数据集共包含4份数据。其中3份分别对应生长测量数据、临界高温（CTMax）数据以及代谢性能数据，这前3份数据已用于2022年发表于《加拿大鱼类与水产科学期刊（CJFAS）》的论文。第4份数据为小型越冬型奇努克鲑（2~3g）的代谢数据，其受试鱼群与前3份数据的受试鱼群为同一批，仅驯化于11℃环境，而其余数据集的受试鱼群分别驯化于11℃、16℃或20℃环境。本数据仅包含用于该CJFAS论文分析的受试鱼，排除了未从代谢或临界高温试验中恢复的个体，以及同期实验季中测量的其他种群个体，因此试验鱼的个体编号存在空缺。 ## 列规格：CJFAS_2022_Dryad_CTM_Data.csv SEQ：数值型编号，从1依次递增至数据集末尾，每一行对应唯一编号 FISH_NUM：唯一鱼类标识编号，编号存在空缺是因为部分个体未从试验中恢复存活，或包含了未纳入本关联论文的其他种群数据 HATCHERY：鱼类的孵化场标识，具体包括：Coleman（科尔曼国家鱼类孵化场）、Winter-Run（来自利文斯通·斯通国家鱼类孵化场的萨克拉门托河越冬型种群）、Feather Fall（来自费瑟河孵化场的费瑟河降海型种群）、Feather Spring（来自费瑟河孵化场的费瑟河春季型种群） ACCLIMATION_TEMPERATURE：鱼类驯化温度，取值为11、16或20℃ TANK_ID：鱼类的养殖 tank 标识，由于养殖 tank 会在年度间复用，因此 tank ID 格式为 TANK_POPULATON_YEAR，种群代码包括：CO（科尔曼种群）、WR（越冬型种群）、FF（费瑟河降海型种群）、FS（费瑟河春季型种群） MASS：鱼类体重，单位为克 STANDARD_LENGTH：标准体长，即从吻端至尾鳍起点的长度，单位为毫米。科尔曼种群的个体未测量标准体长，因此该字段值为NA FORK_LENGTH：叉长，即从吻端至尾鳍分叉处的长度，单位为毫米 TOTAL_LENGTH：总体长，即从吻端至尾鳍最远端的长度，单位为毫米 CONDITION_FACTOR：富尔顿条件指数（Fulton's condition factor），计算公式为 K = mass*100/(FL^3) CTM_CHAMBER：受试鱼参与临界高温试验的试验舱编号，每个试验舱分配有字母标识A、B、C、D、E、F或G CTM_DATE：临界高温试验的日期，格式为mm/dd/yy AGE_AT_CTMAX：临界高温试验时鱼类的日龄，单位为天 ## 列规格：CJFAS_2022_Dryad_Growth_Data.csv SEQ：数值型编号，从1依次递增至数据集末尾，每一行对应唯一编号 HATCHERY：鱼类的孵化场标识，具体包括：Coleman（科尔曼国家鱼类孵化场）、Winter-Run（来自利文斯通·斯通国家鱼类孵化场的萨克拉门托河越冬型种群）、Feather Fall（来自费瑟河孵化场的费瑟河降海型种群）、Feather Spring（来自费瑟河孵化场的费瑟河春季型种群） ACCLIMATION_TEMPERATURE：鱼类驯化温度，取值为11、16或20℃ TANK_ID：养殖 tank 标识，由具体养殖 tank 代码（如I4、E3、H1）与鱼类所属孵化场拼接而成 DATE：鱼类测量的日期，格式为mm/dd/yyyy DAYS：生长测量窗口内的天数，起始值为0 YEAR：生长测量的年份，取值为2017、2018或2019 MASS：鱼类体重，单位为克 STANDARD_LENGTH：标准体长，即从吻端至尾鳍起点的长度，单位为毫米。科尔曼种群的个体未测量标准体长，因此该字段值为NA FORK_LENGTH：叉长，即从吻端至尾鳍分叉处的长度，单位为毫米 TOTAL_LENGTH：总体长，即从吻端至尾鳍最远端的长度，单位为毫米 CONDITION_FACTOR：富尔顿条件指数，计算公式为 K = mass*100/(FL^3) ## 列规格：CJFAS_2022_Dryad_Metabolic_Dataset.csv SEQ：数值型编号，从1依次递增至数据集末尾，每一行对应唯一编号 FISH_ID：唯一鱼类标识编号，编号存在空缺是因为部分个体未从试验中恢复存活，或包含了未纳入本关联论文的其他种群数据 AS_EXP：单次可同时开展4项有氧Scope（Aerobic Scope）试验，每个游泳隧道对应一项试验，该字段用于记录同期开展的试验组别 HATCHERY：鱼类的孵化场标识，具体包括：Coleman（科尔曼国家鱼类孵化场）、Winter-Run（来自利文斯通·斯通国家鱼类孵化场的萨克拉门托河越冬型种群）、Feather Fall（来自费瑟河孵化场的费瑟河降海型种群）、Feather Spring（来自费瑟河孵化场的费瑟河春季型种群） ACCLIMATION_TEMPERATURE：鱼类驯化温度，取值为11、16或20℃ TEST_TEMPERATURE：代谢试验的开展温度，取值范围为8、10、12、14、16、18、20、22、23、24、25、26℃ TANK_ID：鱼类的养殖 tank 标识，由于养殖 tank 会在年度间复用，因此 tank ID 格式为 TANK_POPULATON_YEAR，种群代码包括：CO（科尔曼种群）、WR（越冬型种群）、FF（费瑟河降海型种群）、FS（费瑟河春季型种群） TUNNEL_ID：受试鱼所属的游泳隧道编号，共4个游泳隧道。共享方位方向（东/西）的试验会通过共用的集水系统连接，因此共享系统内的受试鱼试验温度一致 RMR：日常代谢率（Routine Metabolic Rate），单位为mgO2/kg/hr MMR：最大代谢率（Maximum Metabolic Rate），单位为mgO2/kg/hr AS：有氧Scope，计算公式为 AS = MMR - RMR，单位为mgO2/kg/hr MASS：鱼类体重，单位为克 STANDARD_LENGTH：标准体长，即从吻端至尾鳍起点的长度，单位为毫米。科尔曼种群的个体未测量标准体长，因此该字段值为NA FORK_LENGTH：叉长，即从吻端至尾鳍分叉处的长度，单位为毫米 TOTAL_LENGTH：总体长，即从吻端至尾鳍最远端的长度，单位为毫米 CONDITION_FACTOR：富尔顿条件指数（K），计算公式为 K = mass*100/(FL^3) AGE_AT_TRIAL：代谢试验时鱼类的日龄，单位为天 ## 列规格：NOAA_Preliminary_Data_Winter-Run_Small.csv FISH_ID：唯一鱼类标识编号，编号存在空缺是因为部分个体未从试验中恢复存活，或包含了未纳入本关联论文的其他种群数据 HATCHERY：鱼类的孵化场标识，本数据集仅包含单一取值：Winter-run（越冬型） ACCLIMATION_TEMPERATURE：鱼类驯化温度，取值为11、16或20℃ TEST_TEMPERATURE：代谢试验的开展温度，取值范围为8、10、12、14、16、18、20、22、23、24、25、26℃ MASS：鱼类体重，单位为克 STANDARD_LENGTH：标准体长，即从吻端至尾鳍起点的长度，单位为毫米。科尔曼种群的个体未测量标准体长，因此该字段值为NA FORK_LENGTH：叉长，即从吻端至尾鳍分叉处的长度，单位为毫米 TOTAL_LENGTH：总体长，即从吻端至尾鳍最远端的长度，单位为毫米 AS_NUM：单次可同时开展4项有氧Scope试验，每个游泳隧道对应一项试验，该字段用于记录同期开展的试验组别 RMR_DATE：日常代谢率试验的日期，格式为m/d/y TUNNEL_ID：受试鱼所属的2个5L Loligo游泳隧道（Loligo swim tunnels）编号 RMR：日常代谢率，单位为mgO2/kg/hr MMR：最大代谢率，单位为mgO2/kg/hr AS：有氧Scope，计算公式为 AS = MMR - RMR，单位为mgO2/kg/hr EXP_YEAR：试验开展的公历年份，本数据集仅包含单一取值：2018 LOCATION：源种群的采样地点，本数据集仅包含单一取值：CA（加利福尼亚州） LAT：源种群的纬度，本数据集仅包含单一取值：40.7162 LONG：源种群的经度，本数据集仅包含单一取值：-122.425 ELEVATION：源种群的海拔高度，单位为米，本数据集仅包含单一取值：179 MIGRATION：源种群距离旧金山三角洲的距离，单位为英里，本数据集仅包含单一取值：307.4 AGE_AT_TEST：代谢试验时鱼类的日龄，单位为天 ## 共享/获取信息 若对本数据集有疑问，请联系Ken Zillig。