NEO_MLBS_tree_raxml

The maximum likelihood bootstrapping trees from "NEO_alignment.fas", using RAxML (1000 replicates). We partitioned the data by codon position, and GTR+Γ+I, GTR+Γ+I, GTR+I models were applied to each codon position respectively. Alphanumeric codes following species names are the four-letter 1KP transcriptome identifiers, Genbank accessions or both.本研究基于"NEO_alignment.fas"文件构建最大似然法自助抽样进化树，分析采用RAxML软件，共设置1000次重复抽样。我们按密码子位置对数据进行分区，并分别为三个密码子位置应用GTR+Γ+I、GTR+Γ+I、GTR+I进化模型。物种名称后的字母数字编码为四位字符的1KP转录组标识符、GenBank登录号，或两者兼具。