Basel phages annotation and clusters

<b>Table (</b><b>Phages_annotation_and_clusters.tsv</b><b>)</b><b>:</b><br>Annotation of Basel phages using current taxonomy information (Family, Subfamily, Genus) extracted from NCBI Taxonomy (version of DATE) and ICTV (sheet 1); The clustering results (sheet 2).<b>Figure (</b><b>heatmap_Phages_clustering.pdf</b><b>)</b><b>:</b><br>Hierarchical clustering of BASEL coliphages using pairwise proteome similarity scores.<br>To cluster the phages on the basis of proteome similarity, the number of shared homologous proteins between all phage pairs were computed and normalised to the phage proteome length, and the matrix of these pairwise similarity scores were used to compute the complement symmetric proteome composition distance (PCD) matrix. Hierarchical clustering using the average-linkage method applied to the PCD matrix was used to generate the dendrogram that determines the phage groupings. Phage annotations followed the latest ICTV update<b>Rscript (</b><b>Cluster_phages_and_get_heatmaps.R):</b><br>Rscript to reproduce phages clustering and visualisation.<br>Input data: i) <b>similarity_scores_matrix.tsv</b>: a matrix with pairwise similarity scores for all phages. ii) <b>s08_descriptions_with_ICTV.tsv</b> an annotation table for the header.