Differentially expressed transcripts represented by ESTs identified in both libraries.

The AGI number indicates putative Arabidopsis orthologs of bean transcripts identified with tBLASTX search against the TAIR10 database (E-value ≤1×10−4 was considered as significant). Statistical significance was calculated with the Fisher exact test (p≤0.1).
aThe bean EST orthologs of each AGI number are listed in Table S2.
bRE  =  relative expression values obtained by −Log10 of p-values for the up-regulated transcripts and by Log10 of p-values for the down-regulated genes, according to procedures described by Zhou et al.[79].