a nonsyn: non-synonymous coding SNP.b This intergenic region is located upstream of a putative mutase and a putative permease chloride channel (permease_A).c This intergenic region is located between
MAFFT alignment of two MdA-1 genomes originating from different Pennsylvania rivers sampled during different years. SNPs are indicated with vertical lines. Open reading frames are identified.
Variants were called against the NCBI PAO1 reference (RefSeq accession NC_002516.2) and annotated with snpEff. Annotation fields are as follows: LINEAGE = underlying genotype in first position (1 = MP