Additional file 2 of Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra

Number of SNPs detected by different callers or combinations of callers and using different filters. Table S1: Total number of SNPs detected with four different callers and applying different filters. Table S2: Comparison of number of SNPs detected with RNAseq data, identical positions with the SNP chip and genotyping accuracy using 7 calling modalities times 3 options for missing values. (XLSX 12 kb)