Table S1 - RADtyping: An Integrated Package for Accurate <i>De Novo</i> Codominant and Dominant RAD Genotyping in Mapping Populations

Evaluation of the de novo RADtyping approach using a pseudo F1 mapping population. The simulated population was created by crossing two Arabidopsis plants with predefined SNPs in their genomes, and was subject to in silico sequencing together with their parents at different sequencing depths with sequencing errors enabled. De novo codominant and dominant genotyping was evaluated in three key aspects: genotype coverage (a, b), removal of repetitive sites (b, e), and genotyping accuracy (c, f). (PDF)