Mutliple sequence alignments including HSV-2v sequences

This archive contains the following alignments: Whole genome 1, 2 and 3; Whole genome de novo 2 and 3; Non recombinant 1 to 10; UL15 non recombinant and recombinant, UL29 non recombinant and recombinant, UL30 non recombinant and recombinant, UL39 non recombinant and recombinant. Whole genome 2 and 3 and Whole genome de novo 2 and 3 are provided as NEXUS files and include site masks pinpointing the recombinant regions (Whole genome 2 and Whole genome de novo 2 and 3) and large non recombinant fragments (Whole genome 3). All other alignments are provided as FASTA files.本数据集存档包含以下序列比对文件：全基因组1、2与3；从头组装全基因组2与3；非重组型1至10；UL15、UL29、UL30、UL39基因座的非重组与重组型比对。其中，全基因组2、3及从头组装全基因组2、3均以NEXUS格式文件提供，此类文件包含用于精准定位重组区域（对应全基因组2、从头组装全基因组2与3）以及大片段非重组区域（对应全基因组3）的位点掩码。其余所有序列比对文件均以FASTA格式提供。