Phylogenetic reconstructions of Micromonas commoda RCC299 light stress response proteins from the manuscript "Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias"

Phylogenetic reconstructions of Micromonas commoda RCC299 light stress response proteins in nexus (*.tre) and pdf format (*.pdf), corresponding to Fig. 4, Fig. S5 and Dataset S3 in the manuscript "Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias". Trees were inferred using IQ-TREE, using the best LG model identified for each alignment separately, node support was calculated using 1000 ultrafast bootstrap replicates. Filenames for phylogenies contain, in that order, the <i>Micromonas commoda</i> RCC299 protein ID(s), the name of the gene(s) as described in the manuscript and the model used for tree reconstruction.