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Macquarie perch Macquaria australasica DArT genotypes for Lutz et al Cataract River hybridization study

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Research Data Australia2024-12-14 收录
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https://researchdata.edu.au/macquarie-perch-macquaria-hybridization-study/1944599
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Data used in the manuscript: Lutz, M. L., P. Sunnucks, D. G. Chapple, D. Gilligan, M. Lintermans, and A. Pavlova. in prep. Strong bidirectional gene flow between fish lineages separated for over a 100,000 years.File “Report_DMacq19-4705_8_moreOrders_SNP_mapping_2_with_Cataract_River.csv” is the genotyping file from Diversity Arrays Technology. It contains genotypes for 2724 Macquarie perch individuals (including those not used for this study) from two basins: Murray Darling basin (MDB) and Hawkesbury-Nepean Basin (HNB).File “Metadata.txt” explains content of columns and rows in the genotyping file.File Lutz_et_al_Cataract_River_hybridization_covariate_file.csv contains dartR covariate file for paper (2). Columns: id- individual identification, pop- population (CDM- Cataract Dam, CR- Cataract River, dontuse- not used in this study), pop_mitolineage- population and mitochondrial lineage, as per Pavlova et al 2017 Evolutionary Applications 10:531–550 (MDB- inland Murray Darling Basin mitolineage, HNB- coastal Hawkesbury-Nepean Basin mitolineage)

本手稿所用数据源自Lutz, M. L., P. Sunnucks, D. G. Chapple, D. Gilligan, M. Lintermans 及 A. Pavlova的待刊(in prep.)研究。 文件"Report_DMacq19-4705_8_moreOrders_SNP_mapping_2_with_Cataract_River.csv"为来自Diversity Arrays Technology的单核苷酸多态性(Single Nucleotide Polymorphism, SNP)基因分型文件,包含2724尾麦氏鲈(Macquarie perch)的基因型数据(涵盖本研究未纳入分析的个体),采样样本来自两个流域:墨累-达令流域(Murray Darling Basin, MDB)与霍克斯伯里-内皮恩流域(Hawkesbury-Nepean Basin, HNB)。 文件"Metadata.txt"用于说明该基因分型文件中各行列的内容含义。 文件"Lutz_et_al_Cataract_River_hybridization_covariate_file.csv"为本第二篇论文所用的dartR协变量文件,各列说明如下:id为个体标识,pop为种群(CDM:卡塔拉克特坝种群,CR:卡塔拉克特河种群,dontuse:本研究未使用的种群),pop_mitolineage为种群及线粒体世系,参照Pavlova等人2017年发表于*Evolutionary Applications*的研究(卷10,页码531–550),其中MDB代表内陆墨累-达令流域线粒体世系,HNB代表沿海霍克斯伯里-内皮恩流域线粒体世系。
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Monash University
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