R functions to filter a vcf
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These functions can be used to filter a vcf file. They can remove loci that have a given amount missing data, remove individuals that have a given amount of missing data, remove individuals by name, and create histograms either of missing data per locus or individuals. Finally, once data are filtered, there is a function to write a structure output file.
本系列工具可用于对变体调用格式(Variant Call Format,VCF)文件进行过滤处理。其可移除存在指定缺失数据量的遗传位点、存在指定缺失数据量的样本,还可按名称移除指定样本,以及针对单个遗传位点或单个样本的缺失数据情况绘制直方图。最终,在完成数据过滤后,可生成Structure格式输出文件(Structure)。
创建时间:
2017-11-20



