Pearl River estuary microbiome and virome
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https://figshare.com/articles/dataset/Pearl_River_estuary_microbiome_and_virome/16618255/7
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<b>Project description:</b> Deep metagenomic sequencing on microbial and viral communities in surface waters of the Pearl River estuary (PRE), a typical subtropical. <b>Data description: </b>Data for assembly, MAGs, viral like contigs and populations generated using the PRE microbial metagenomic data sets - data includes:PRET1608S??F00_idba-ud_final.fna.gz: the contigs generated from virome(<0.2 μm) (5 files).PRET1608S??F0{2/7}_megahit_final.fna.gz: the contigs generated from cellular metagenome(0.2-0.7 μm and 0.7-2.7μm) (10 files).PRET1608S??F0{2/7}_MAGs.tar.gz: MAGs with ≥ 50% completeness and ≤ 10% contamination of each metagenome.<br>PRE_all_dereplicated_MAGs.tar.gz: 1,205 non-redundant prokaryotic genomes with ≥ 50% completeness and ≤ 10% contamination.<br>PRE_viral_contigs.fasta: Putative viral contigs identified from contigs of all the three size fractions in PRE (1 file).PRE_viral_contigs_95-80.fna: Viral populations based on 95% nucleotide identity and 80% of the genome coverage criterion (1 file).Supplementary Table 1: Statistics for each of the prokaryotic draft genomes, including completion and contamination. <br>Supplementary Table 2: The distribution of each viral population in each PRE metagenome and the taxonomy assignment of each viral population at family level.<br>Supplementary Table 3: The statistics for each viral populations determined by checkV, including the length and completeness.<br>SupplementalInformation1-6: the alignment, tree file and iTOL profile of bacterial and archaeal MAGs.SupplementalInformation7: The name match between the sra files and libraries deposited in NCBI, the assembly files , genome files deposited in figshare and the alias referenced in the Tables and Supplementary Tables.
提供机构:
figshare
创建时间:
2021-12-16



