Full length sequence and classification for circRNAs
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下载链接：
https://figshare.com/articles/dataset/Full_length_sequence_and_classification_for_circRNAs_downloaded_from_circRNAdb/8105027
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资源简介：
Here, the full length circRNA sequences and
circRNA classification are given for the circRNAs downloaded from circbase,
circRNAdb and plantcircbase database.The details for the annotation file and
the reference genome are as follows:
1. circbase
and circRNAdb
The annotation file is downloaded from
circRNAdb (http://202.195.183.4:8000/circrnadb/resources.php)
and the reference genome hg19 is downloaded from UCSC (http://hgdownload.soe.ucsc.edu/downloads.html#human).
2. Arabidopsis
thaliana
The reference genome and annotation version
TAIR10.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/
3. Poncirus
trifoliata
The reference genome and annotation version
Citrus_clementina_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant
4. Glycine
max
The reference genome and annotation
version Glycine_max_v2.0.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/
5. Gossypium
arboreum
The reference genome and annotation
version Gossypium_arboreum_v1.0 are downloaded from https://ftp.ncbi.nih.gov/genomes/refseq/plant/
6. Gossypium
hirsutum
The reference genome and annotation
version NBI_Gossypium_hirsutum_v1.1 are downloaded from https://www.cottongen.org/data/download/genome_NBI_AD1
7. Gossypium
raimondii
The reference genome and annotation
version Graimondii_221 are downloaded from ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Graimondii/
8. Hordeum
vulgare
The reference genome and annotation
version Hv_IBSC_PGSB_v2.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/
9. Oryza
sativa
The reference genome and annotation
version IRGSP-1.0.38 are downloaded from
ftp://ftp.ensemblgenomes.org/pub/plants/release-38/
10. Solanum
lycopersicum
The reference genome and annotation
version SL2.50.38 are downloaded from
ftp://ftp.ensemblgenomes.org/pub/plants/release-38/
11. Solanum
tuberosum
The reference genome and annotation version
SolTub_3.0.38 are downloaded from
ftp://ftp.ensemblgenomes.org/pub/plants/release-38/
12. Triticum
aestivum
The reference genome and annotation version
IWGSC1.0+popseq.29 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-29/
13. Zea
mays
The reference genome and annotation version
AGPv4.38 are downloaded from ftp://ftp.ensemblgenomes.org/pub/plants/release-38/
创建时间：
2019-05-10
