Additional file 3 of Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes

Additional file 3: Table S5 shows all latent core-resistome ARGs and the fARGene gene sequences within their clusters (90% identity level). The table includes the gene sequence identifiers; the clusters to which each sequence belongs; which of the sequences were cluster centroids and, hence, used as the representative sequence for the ARG; and the nucleotide sequences. Table S6 shows the context analysis of all latent core-resistome ARGs. The table includes the cluster identifiers; ARG class; the number of gene sequences in the cluster; the closest established ARG with % amino acid identity to CARD; host phyla of the gene sequences when identified; host species of the gene sequences when identified with human pathogens marked; genes associated with mobile genetic elements (MGEs) identified in the genetic context of the gene; co-localized ARGs in the genetic context of the gene; and the environments where the ARG was considered part of the core-resistome. Table S7 corresponds to the 10,375 metagenomic run IDs included in this study and retrieved from the ENA. Table S8 corresponds to the NCBI Assembly IDs used to build the fARGene database.