Additional file 12 of Methylation in MAD1L1 is associated with the severity of suicide attempt and phenotypes of depression

Additional file 12: Table S4. Linkage disequilibrium for investigated SNPs based on the output from ( https://snipa.helmholtz-muenchen.de/snipa3/ ) with default settings. Only associations between investigated SNPs are shown. Column description provided by SNIPA: QRSID, Query SNP rsID; RSID, Proxy SNP rsID; RSALIAS, Proxy SNP alias rsID(s); CHR, Chromosome; POS1, Sentinel SNP Position; POS2, Proxy SNP Position; DIST, Distance; R2, LD r^2; D, LD D; DPRIME, LD D'; MAJOR, Proxy Allele A; MINOR, Proxy Allele B; MAF, Allele B Frequency; CMMB, Recombination Rate (CM/Mb); CM, Genetic distance (CM); COMPEFFECTS, Compressed functional annotation of Proxy SNP; TRAIT, Associated with trait (yes/no); CISEQTL, Associated with eQTL in cis (yes/no); TRANSEQTL, Associated with eQTL in trans (yes/no); GENES, Genes hit or close-by (distance 5 KB max); REGGENES, Potentially regulated genes (linked via promoter or enhancer); EQTLGENES, Genes linked via eQTL associations. Abbreviations: SNP, single nucleotide polymorphism.