Integrated scRNA-seq data in scIBD

Data files used in scIBD (www.scibd.cn) is also available here. Gene expression matrix Integrated gene expression matrix of scIBD (Anndata object in H5AD format) (scIBD.gex_matrix.h5ad) Integrated gene expression matrix of scIBD (Seurat object in RDS format) (scIBD.gex_matrix.rds) Meta data of scIBD (scIBD_sample_meta_data.txt.gz) Differential expressed genes Differential expressed genes across cell subtypes within each major cluster (scIBD.deg_by_major_cluster.rds) Differential activated regulons Differential regulons between healthy and disease in each major cluster (scIBD.diff_regulon_by_major_cluster.rds)