MOESM9 of Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production

Additional file 9: Table S3. Differentially expressed miRNA species and their targets in wild-type ‘Angeleno’ and in PpeIFiso4G11-silenced transgenic line. 1 Treatment refers to the non-infected (NI) to infected, with either PPV-M or PPV-D, status of the plants. 2 Genotype refers either to wild-type, non-transformed plum (‘Angeleno’ NT) or to AG7303–96 transgenic plants (named here ‘PpeIFiso4G11-silenced’). Total normalized reads were calculated dividing the number of total reads of a specific molecule by the total number of reads in the library. Expectation for target genes were obtained from the pSRNA software [51]. The NCBI link allows to retrieve the identity and true/putative function of each target protein. A) The most differentially expressed miRNA species in Prunus salicina ‘Angeleno’ wild-type (non-transgenic) plants. B) The most differentially expressed miRNA species in Prunus salicina ‘Angeleno’ PpeIFiso4G11-silenced plants. C) miRNA species uniquely expressed either in Prunus salicina ‘Angeleno’ wild-type or PpeIFiso4G11-silenced plants.