Data sets and code for "Suprachiasmatic Nucleus-wide Estimation of Oscillatory Temporal Dynamics" (Yao et al, 2024)

Data from iDISCO clearing and scanning of three adult mouse suprachaismatic nuclei.  Brains are labeled as b1, b2, and b3. Each lobe of the SCN is recorded in a separate csv file.  Animals were sacrificed at ZT 19. 

Data for PER2::LUC recordings of ix adult mouse suprachaismatic nuclei.  For each slice there are two files: the time series data (labeled "slice-[orientation]-time-series-#" and the coordinates of the pixels represented (labeled "slice-[orientation]-pixel-coords-#."

Code in MATLAB to perform phase extraction, linear modeling, phase estimation, and dynamical simulation.