Spidroin and Hox Annotations for Schöneberg et al. (accepted)

This repository contains the data and scripts to recreate the spidroin and hox annotations used for Schöneberg et al., (accepted) : Three novel Spider Genomes unveil Spidroin Diversification and Hox Cluster Architecture: Ryuthela nishihirai (Liphistiidae), Uloborus plumipes (Uloboridae) and Cheiracanthium punctorium (Cheiracanthiidae).

The files ending with _hmmer_profiles.tar.gz contain the hmmer profiles used to run nhmmer and the files ending with _nhmmer_results.tar.gz contain the corresponding results for spidroin and hox genes, respectively. Further, there are three python scripts containing the code used to summarize, filter and annotate the spidroin and hox genes. In order to recreate the spidroin results, both the profiles and results tar-balls need to be unpacked. Then, run the script spidroin_summarize_hmmer.py and subsequently the analyse_spidroins.py script. For recreating the hox annotations, unpack the profile and results tar-balls and run the analyse_hox_genes.py script.