Gene expression data of patients with medulloblastoma from "Prediction of the 3D cancer genome from whole-genome sequencing using InfoHiC"

Total RNA were extracted from fresh frozen tissues of patients with medulloblastoma using the Maxwell RSC RNA FFPE Kit (Promega, Madison, WI, USA). The RNA-seq library was prepared using the SureSelectXT RNA Direct Library Kit (Agilent Technologies, Santa Clara, CA, USA) and sequenced using the Illumina NovaSeq6000 platform. Paired-end RNA-seq reads (101 bp) were mapped to GRCh37 using STAR (Dobin et al. 2013), and gene expression was quantified using Cufflinks (Trapnell et al. 2010).