Genomic surveillance of SARS-CoV-2 in Portugal

Whole-genome sequencing data of SARS-CoV-2 collected in Portugal on behalf of the nationwide laboratory surveillance coordinated by the National Institute of Health Dr. Ricardo Jorge (INSA), Lisbon, Portugal. This project includes sequencing data generated in several institutes (specified by "CENTER NAME" in Sample attributes) enrolled in the "Portuguese network for SARS-CoV-2 genomics”: - Instituto Nacional de Saude Doutor Ricardo Jorge, I.P. (INSA), Portugal (Project Coordinator) - Instituto Gulbenkian de Ciencia (IGC), Portugal - Institute of Biomedicine (iBiMed), Universidade de Aveiro, Portugal - BioSystems and Integrative Sciences Institute (BioISI), Universidade de Lisboa, Portugal - Centro de Investigaçao em Biodiversidade e Recursos Geneticos (CIBIO), Universidade do Porto, Portugal - Instituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Portugal - Faculdade de Medicina, Universidade de Coimbra, Portugal Published read datasets correspond to quality-processed reads (i.e., using Trimmomatic for Illumina or NanoFilt for MinION reads) mapped to the SARS-CoV-2 reference genome #MN908947 using the INSaFLU integrated web-suite pipeline (https://insaflu.insa.pt/).