Silva taxonomic training data formatted for DADA2 (Silva version 138.2)
收藏NIAID Data Ecosystem2026-05-02 收录
下载链接：
https://zenodo.org/record/14169025
下载链接
链接失效反馈官方服务：
资源简介：
These DADA2-formatted training fasta files were derived from the Silva Project's version 138.2 release: https://www.arb-silva.de/
These fastas were generated by the following commands (using the dada2 R package version 1.35.4):
path <- "~/tax/Silva/v138_2"fn.out.slv <- "~/Desktop/silva_nr99_v138.2_toGenus_trainset.fa.gz"dada2:::makeTaxonomyFasta_SilvaNR(file.path(path, "SILVA_138.2_SSURef_NR99_tax_silva.fasta.gz"), file.path(path, "tax_slv_ssu_138.2.txt"), fn.out.slv) fn.out.spc.slv <- "~/Desktop/silva_nr99_v138.2_toSpecies_trainset.fa.gz"dada2:::makeTaxonomyFasta_SilvaNR(file.path(path, "SILVA_138.2_SSURef_NR99_tax_silva.fasta.gz"), file.path(path, "tax_slv_ssu_138.2.txt"), fn.out.spc.slv, include.species=TRUE)
fn.out.aS.slv <- "~/Desktop/silva_v138.2_assignSpecies.fa.gz"dada2:::makeSpeciesFasta_Silva("~/tax/silva/v138_2/SILVA_138.2_SSURef_tax_silva.fasta.gz", fn.out.aS.slv)
创建时间：
2024-11-15
