Additional file 5 of SARS-CoV-2 surveillance in Italy through phylogenomic inferences based on Hamming distances derived from pan-SNPs, -MNPs and -InDels

Additional file 5. Newick file inferred through variant calling-based analysis, binary matrix of functional annotations of variants (pan-SNPs, -MNPs and -InDels) with the program “vcf2mst.pl” and Hamming-like distance-based minimum spanning tree (MST) implemented in GrapeTree (“MSTree V2”), from the dataset of SARS-CoV-2 samples isolated from several Italian provinces and retrieved by GENPAT from GISAID until April 2021 (n = 15,451).