Lva_GenomicSignatures

This repository contains the data and code supporting the analyses of candidate loci under selection in the endangered alpine tree frog, <i>Litoria verreauxii alpina</i>. Files include raw DArTseq SNP data and associated sample metadata used for filtering, selection scans, annotation, and downstream interpretation. Metadata files provide sample identifiers, population assignments, collection year, and other variables required to reproduce the analyses; precise location information has been omitted to protect sensitive population sites.The repository also includes R scripts used for data import, filtering, preparation of input files, processing of results, and visualization of selection scan outputs. Import and export files associated with BayPass analyses are provided to enable reproduction of the selection scan workflow, including formatted input files, auxiliary files, and relevant output files generated during analysis.NCBI BLAST results and associated annotation tables used to identify and interpret candidate loci are also included. These files support the annotation of putative genes and functional categories associated with loci identified as candidates under selection.