Data for the Analysis of Rdr6 ('Morden Blush' x G168-2) via Linkage Analysis and BSA-seq

The data and scripts presented here represents the process for creating a linkage map and mapping rose a black spot resistance quantitative trait locus in a tetraploid garden rose population. Included are the raw data files (.CEL, zipped folder) from genotyping via the rose WagRhSNP 68k Axiom Array. The scripts (.R) included are for filtering, linkage map construction, and locus mapping. Additional data files include the required input and output files from each mapping step, the phenotyping file used for linkage analysis and the gene mining file (both as .csv). Also included are the .sh script and additional materials for marker filtering. Finally, raw data files for BSA-seq are included for the BSA-seq analysis presented in the manuscript. This data is released due to the publishing of a manuscript detailing the work using this data.