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Additional file 9 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

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Additional file 9: Table 8. This table contains differentially expressed (DE) genes between fixed/cryo and cryo mouse lung samples, analyzed by cell population. The test was performed with Seurat MAST, and genes were considered DE with a FDR adjusted p-value < 0.05, and present in at least 10% of cells (see Methods). A positive Log2FC indicates higher expression in fixed or fixed/cryo samples, whereas negative values indicate differential expression in cryo or fixed samples.
提供机构:
Batlle, Eduard; Butler, Lisa M.; Jensen, Kirk B.; Nieto, Juan C.; Ryan, Natalie K.; Gut, Ivo; Caratù, Ginevra; Gudiño, Victoria; Bernardes, Joana P.; Roth, Sara; Martelotto, Luciano G.; Jiménez-Gracia, Laura; Rosenstiel, Philip; Tran, Florian; Hernando-Momblona, Xavier; Plummer, Jasmine; Parish, Ian A.; van den Berge, Maarten; Kole, Tessa; van der Velde, Petra L.; Salas, Azucena; Sievers, Laura Katharina; Melón-Ardanaz, Elisa; Nawijn, Martijn C.; Heyn, Holger; Marchese, Domenica; Schreiber, Stefan; Wise, Kellie
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2024-08-15
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