Demographic and conservation genomic assessment of the threatened marbled teal (Marmaronetta angustirostris)

Samples.xlsx: Description of individual and population codes used in the different analyses and genetic datasets.mtDNA_DNAsp.txt: Input file used to calculate genetic diversity statistics in DNASP for the mtDNA dataset.mtDNA_PopArt.txt: Input file used to estimate the haplotype network in POPART for the mtDNA dataset.mtDNA_Arlequin.arp: Input file used to perform ARLEQUIN analyses for the mtDNA dataset.R075minMAF001_R0.arp: Input file used to perform ARLEQUIN analyses for the ddRAD-seq dataset.R075minMAF001_R0.str: Input file (ddRAD-seq data) used to perform genetic clustering (STRUCTURE) and principal component (PCA) analyses for wild and captive populations of marbled teal. The dataset only includes unrelated individuals (φij ≤ 0).R075minMAF001_R0_Wild.str: Input file (ddRAD-seq data) used to perform genetic clustering (STRUCTURE) and principal component (PCA) analyses for wild populations of marbled teal. The dataset only includes unrelated individuals (φij ≤ 0).R075minMAF001.haps.radpainter: Input file (ddRAD-seq data) used to perform FINERADSTRUCTURE analyses including all individuals.R075minMAF001_R0.haps.radpainter: Input file (ddRAD-seq data) used to perform FINERADSTRUCTURE analyses. The dataset only includes unrelated individuals (φij ≤ 0).FASTSIMCOAL2.zip: This ZIP folder contains input files for demographic analyses in FASTSIMCOAL2.STAIRWAYPLOT.zip: This ZIP folder contains input files for demographic reconstructions in STAIRWAY PLOT.