Data from: Genotyping SNPs and inferring ploidy by amplicon sequencing for polyploid, ploidy-variable organisms

The rda files are to be loaded into R statistical software. All files have two matrices, one of read counts for reference alleles and one for read counts of alternate alleles. Rows are samples and columns are loci. 10n_sturgeon_readCounts.rda: presumed 10N white sturgeon 8n_12n_sturgeon_readCounts.rda: confirmed 8N and 12N white sturgeon at various subsampling levels. Rownames indicate the sample number, subsampling level as a percentage, and the true ploidy. 2n_3n_Chinook_readCounts.rda: confirmed 2N and 3N Chinook salmon. Rownames indicate the true ploidy. white_sturgeon_genos: ".genos" files produced by the GT-seq pipeline with genotypes and read counts for all samples in this study本数据集的.rda格式文件需导入R统计软件中进行分析。所有文件均包含两个矩阵：其一为参考等位基因（reference alleles）的读段计数（read counts）矩阵，其二为变异等位基因（alternate alleles）的读段计数矩阵。矩阵行代表样本，列代表基因座。10n_sturgeon_readCounts.rda：对应推测为10倍体的白鲟样本数据。8n_12n_sturgeon_readCounts.rda：对应经确认的不同下采样（subsampling）水平下的8倍体与12倍体白鲟样本数据，该文件的行名包含样本编号、以百分比表示的下采样水平以及真实倍性（ploidy）信息。2n_3n_Chinook_readCounts.rda：对应经确认的2倍体与3倍体奇努克鲑（Chinook salmon）样本数据，其行名仅标注真实倍性信息。white_sturgeon_genos：为由GT-seq流程生成的.genos格式文件，包含本研究全部样本的基因型与读段计数信息。