PHI-base

PHI-base database contains expertly curated molecular and biological information on genes proven to affect the outcome of pathogen-host interactions. PHI-base catalogues experimentally verified pathogenicity, virulence and effector genes from fungal, Oomycete and bacterial pathogens, which infect animal, plant, fungal and insect hosts. An online community curation portal, called PHI-Canto (https://canto.phi-base.org) supports article curation by authors with datasets being displayed at http://phi5.phi-base.org. Data and source code availability: All data sets are available from Github at https://github.com/PHI-base. Discussion board: curation issues for community curation can be discussed and followed using the PHI-canto curation tracker (https://github.com/PHI-base/curation) Funding: PHI-base is funded from the UK Biotechnology and Biological Sciences Research Council (BBSRC) [BB/S020020/1]. Citation reference: Urban, M. et al (2022). NAR doi: 10.1093/nar/gkab1037PHI-base数据库收录经专家精心编注的、已被证实可影响病原-宿主互作结局的基因的分子与生物学信息。该数据库系统编录了来自真菌、卵菌（Oomycete）、细菌病原体的经实验验证的致病基因、毒力基因与效应基因，此类病原体可侵染动物、植物、真菌与昆虫宿主。该数据库配套设有名为PHI-Canto（https://canto.phi-base.org）的在线社区编注门户，支持作者开展文献编注工作，相关数据集可于http://phi5.phi-base.org查阅展示。数据与源码获取说明：所有数据集均可从GitHub获取，获取地址为https://github.com/PHI-base。讨论板块：社区编注相关的编目问题，可通过PHI-Canto编目追踪器（https://github.com/PHI-base/curation）进行讨论与跟踪。资助信息：PHI-base由英国生物技术与生物科学研究理事会（Biotechnology and Biological Sciences Research Council, BBSRC）资助 [BB/S020020/1]。参考文献：Urban M 等(2022). NAR，DOI: 10.1093/nar/gkab1037

搜集汇总

背景与挑战

背景概述

PHI-base是一个专业策展的数据库，收录了经实验验证的病原体与宿主互作基因信息，包括致病性、毒力和效应基因。该数据库支持社区策展，数据可通过在线平台和GitHub获取，适用于真菌、卵菌和细菌病原体研究。