Additional file 3 of ChromGene: gene-based modeling of epigenomic data

Additional file 3. ChromGene assignments. An Excel spreadsheet containing the ChromGene assignments for the 127 cell types. These assignments are reported in four tabs, two based on the hg19 assembly and gene annotation (ENSEMBL v65/GENCODE v10) and two based on an hg38-based gene annotation (GENCODE v41) lifted over to hg19. For each assembly, we provide one tab using the Roadmap Epigenomics Consortium “Standardized Epigenome names” for designating the cell type, and another tab using the Epigenome IDs (EIDs) [1]. Each row after the header row corresponds to one gene. The first five columns from left to right are the chromosome of the gene, the left-most coordinate of the gene, the right-most coordinate of the gene, the gene symbol, and strand of the gene. The remaining 127 columns correspond to different cell types, and the entries to ChromGene assignments.