PHY_ML_tree_garli

The maximum likelihood tree inferred from "PHY_alignment.fas" (translated into amino acids), using Garli with genthreshfortopoterm set to 1,000,000 and 8 independent runs. Using ProtTest (65), JTT + F was found to be the best empirical substitution model under the Akaike Information Criterion. Alphanumeric codes following species names are the four-letter 1KP transcriptome identifiers, Genbank accessions or both.本研究以经氨基酸翻译处理的"PHY_alignment.fas"序列比对文件为基础，使用Garli软件，将genthreshfortopoterm参数设置为1000000，开展8次独立运行，构建出最大似然树（maximum likelihood tree）。本研究借助ProtTest软件（参考文献65）开展进化模型筛选，依据赤池信息准则（Akaike Information Criterion），最终确定最优经验替换模型为JTT + F。物种名称后的字母数字编码为四字母格式的1KP转录组标识符、GenBank登录号，或二者兼具。