Pseudogenes document protracted parallel regression of oral anatomy in myrmecophagous mammals
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Supplementary Data for: Pseudogenes Document Protracted Parallel Regression of Oral Anatomy in Myrmecophagous Mammals Christopher A. Emerling*, Sophie Teullet, Rémi Allio, John Gatesy, Mark S. Springer and Frédéric Delsuc* *Correspondence to christopher.emerling@reedleycollege.edu and frederic.delsuc@umontpellier.fr Description of available files: Supplementary Dataset S1: Complete DNA sequence alignments for all focal genes and taxa. Supplementary Dataset S2: Reference phylogeny and DNA sequence alignments for PAML analyses. Supplementary Figure S1: DNA sequence alignments for ostentorian (Carnivora + Pholidota) genes ACP4, AMBN, AMELX, and AMTN. Supplementary Figure S2: DNA sequence alignments for ostentorian (Carnivora + Pholidota) genes DSPP, ENAM, KLK4, and MMP20. Supplementary Figure S3: DNA sequence alignments for ostentorian (Carnivora + Pholidota) genes ODAM, ODAPH, TAS1R3, MYH16, and PKD2L1. Supplementary Figure S4: DNA sequence alignments for ostentorian (Carnivora + Pholidota) TAS1R1. Supplementary Figure S5: DNA sequence alignments for ostentorian (Carnivora + Pholidota) TAS1R2. Supplementary Figure S6: DNA sequence alignments for xenarthran TAS1R genes. Supplementary Figure S7: DNA sequence alignments for xenarthran MYH16 and PKD2L1. Supplementary Figure S8: DNA sequence alignments for aardvark genes. Supplementary Figure S9: DNA sequence alignments for numbat ACP4 and TAS1R2. Supplementary Figure S10: DNA sequence alignments for numbat TAS1R1. Supplementary Figure S11: DNA sequence alignments for monotreme genes. Supplementary Table S1: Information on genome assemblies used in this study. Supplementary Table S2: Species used as outgroups for PAML analyses. Supplementary Table S3: PAML and pseudogene dating analysis results for ACP4. Supplementary Table S4: PAML and pseudogene dating analysis results for AMBN. Supplementary Table S5: PAML and pseudogene dating analysis results for AMELX. Supplementary Table S6: PAML and pseudogene dating analysis results for AMTN. Supplementary Table S7: PAML and pseudogene dating analysis results for DSPP. Supplementary Table S8: PAML and pseudogene dating analysis results for ENAM. Supplementary Table S9: PAML and pseudogene dating analysis results for KLK4. Supplementary Table S10: PAML and pseudogene dating analysis results for MMP20. Supplementary Table S11: PAML and pseudogene dating analysis results for MYH16. Supplementary Table S12: PAML and pseudogene dating analysis results for ODAM. Supplementary Table S13: PAML and pseudogene dating analysis results for ODAPH. Supplementary Table S14: PAML and pseudogene dating analysis results for PKD2L1. Supplementary Table S15: PAML and pseudogene dating analysis results for TAS1R1. Supplementary Table S16: PAML and pseudogene dating analysis results for TAS1R2. Supplementary Table S17: PAML and pseudogene dating analysis results for TAS1R3.
