Additional file 2 of The plant-like protein phosphatase PPKL regulates parasite replication and morphology in Toxoplasma gondii

Additional file 2: Table S4. Statistical analysis of mass spectrometry datasets identified in the purified samples from the parental line and the TurboID-PPKL line using streptavidin beads. The fold changes and P-values were calculated by comparing the peptide numbers of the TurboID-PPKL (PPKL_1/2) with those of the parental line (RH_1/2). Note that the peptide number with zero in the RH was considered as 1 for the analysis. The results were used to plot Figure S3D, and the hits with P<0.05 were used for protein interaction analysis by STRING (Figure S3E) and Gene Ontology analysis in ToxoDB (Fig S3G).