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Dataset of "Mating system of freeranging domestic dogs and its consequences for dog evolution"

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NIAID Data Ecosystem2026-05-02 收录
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https://figshare.com/articles/dataset/Dataset_of_Mating_system_of_freeranging_domestic_dogs_and_its_consequences_for_dog_evolution_/27323778
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Additional resource. SNP genotypes from the Moroccan dogs used to reconstruct the genealogy. Files in Plink format (.ped, .map) for 163,594 autosomal SNPs for 196 Moroccan dogs. Dataset S1. Reconstructed pedigrees including all the individuals sampled in the three populations. The name of the father and mother is indicated as well as the number of offspring and mates. For Morocco and Italy, three different offspring numbers for each individual correspond to (i) the total number of offspring, (ii) a corrected measure considering only one offspring per parent pair in litters, and (iii) a measure excluding individuals sampled as pups. Dataset S2. Social network data for the Moroccan population. These individual social network measures are the average of measures collected from 2017 to 2020. For each year and every individual, values were z-transformed. The dataset also includes information about sex of individuals and the reproductive success data inferred from the genealogy (the number of offspring and the number of reproductive mates). Dataset S3. R scripts used for the data analysis. R markdown file shortly describing and compiling the different analyses performed on pedigrees: data extraction, computation and comparison of the number of offspring and mates, tree parentage figures, identification of close inbreeding cases, sex-biased dispersal in Ukraine, simulation of random mating, social network analysis, computation of the average number of full and halfsiblings, code to run pedigree simulation, and analyses of simulation outputs (close inbreeding cases, pedigree statistics, subsampling).
创建时间:
2025-08-25
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