Supplemental Material for Grabowski et al., 2024

Files to accompany the analysis of the <em>Arachis hypogaea</em> Line8 v1 genome assembly.
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File S1.txt: The percentages of sequence for each annotation within 5Mb windows across the Line8 genome assembly. 
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File S2.txt: Positions of syntentic regions and and inversions between Line8 homeologs.
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File S3.txt: Percent sequence identity, in 100kb windows, for alignments of <em>A.duranensis</em> and <em>A.ipaensis</em> to the full Line8 assembly without Arahy.09_alt.
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File S4.txt:  Percent sequence identity, in 100kb windows, for alignments of <em>A.duranensis</em> and <em>A.ipaensis</em> to Line8 subgenomes A and B separately.
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File S5.vcf.gz:  VCF containing the SNPs for Line8 when mapped to the Tifrunner assembly, including predicted effects of SNPs