DNA binding motifs within L1 and Alu are depleted within genes.

Raw counts of motifs within Alu or L1 in genes or intergenically were normalized by the number of Alu or L1 within genes or intergenic regions. The presence/absence of the Alu-terminus motif was calculated as a negative control as it has not been shown to have a biologically significant impact on Alu expression or gene function (*/NS = Not Significant). The motifs presented in this table were depleted within genes compared to intergenic with a Yates corrected chi-square p-value p<0.05.