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Corallium rubrum genome and transcripts alignment

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DataONE2024-07-15 更新2024-07-27 收录
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Corallium rubrum, the precious red coral, is an octocoral endemic to the western Mediterranean Sea. It plays a key role in the well-known Mediterranean coralligenous ecosystem, a biodiversity hotspot. We sequenced its genome for further investigations into its biology (skeleton formation and color, genetic diversity), ecology, and evolutionary history., The genome sequence of Corallium rubrum assembled at the CSM was aligned using STAR with its transcriptome assembled using trinity. RNA and genomic DNA were extracted from the same organism., , # Corallium rubrum Genome and transcripts alignment [https://doi.org/10.5061/dryad.ksn02v7d6](https://doi.org/10.5061/dryad.ksn02v7d6) The genome sequence of *Corallium rubrum* assembled at the CSM was aligned using STAR with its transcriptome assembled using trinity. RNA and genomic DNA were extracted from the same organism. ## Description of the data and file structure The file corresponds to the BAM file alignment and the indexed BAI file ## Sharing/Access information n/a ## Code/Software n/a

珍贵红珊瑚(Corallium rubrum)为八放珊瑚,是西地中海特有的物种。其在广为人知的地中海珊瑚岩生生态系统——一处典型生物多样性热点中发挥关键作用。本研究对其基因组进行测序,以进一步探究其生物学特性(骨骼形成与体色、遗传多样性)、生态学特征及进化历史。 在CSM组装的珍贵红珊瑚基因组序列,通过STAR工具与使用Trinity组装的转录组进行序列比对。实验所用RNA与基因组DNA均取自同一生物体。 # 珍贵红珊瑚(Corallium rubrum)基因组与转录本比对 [https://doi.org/10.5061/dryad.ksn02v7d6](https://doi.org/10.5061/dryad.ksn02v7d6) 在CSM组装的珍贵红珊瑚基因组序列,通过STAR工具与使用Trinity组装的转录组进行序列比对。实验所用RNA与基因组DNA均取自同一生物体。 ## 数据与文件结构说明 本文件对应BAM格式比对文件及其索引BAI文件。 ## 共享与获取信息 无 ## 代码与软件 无

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