Data from: A global assembly of landrace oat (<i>Avena sativa</i> L.) accessions is a discovery resource for adaptive variation, association mapping, and trait deployment

Oat Landrace Diversity (OLD) Panel phenotypes, genotypes, and metadata from: Rahman et al. (2024) "A global assembly of landrace oat (<em>Avena sativa</em> L.) accessions is a discovery resource for adaptive variation, association mapping, and trait deployment". <strong>"File S1"</strong> and <strong>"File S2"</strong> include population metadata and phenotypic (environmental) data used in association mapping, of which mapping results are listed in <strong>"File S3"</strong>. <strong>"Rahman_et_al_2024_Metadata.geojson"</strong> is geographical information of OLD Panel accessions surveyed in this study. <strong>"SBATCH_RUN_nsgc_deepvariant_glsnexus.sh"</strong> and <strong>"RUN_nsgc_deepvariant_glsnexus.sh"</strong> are scripts for variant calling and filtering in SciNet clusters from GBS alignments. IMPORTANT: Do not pull containers in $HOME directory - put them in the main path (for use in SciNet clusters). Google DeepVariant - generates "deepvariant_1.6.0.sif" (RUN: singularity pull docker://google/deepvariant:1.6.0); GLNexus - generates "glnexus_v1.4.1.sif" (RUN: singularity pull docker://google/glnexus:1.4.1). <strong>"DeepVariantWGS.yml"</strong> is the config file for running GLNexus. <strong>"nsgc.gdv.gln.cohort.clean.maf01maxmiss75diploid.beagle_sorted_filt.gt.vcf"</strong> is the final genotype file described in the study.本数据集包含燕麦地方品种多样性（OLD）面板的表型、基因型与元数据，源自Rahman等人2024年发表的研究论文《全球地方品种燕麦（<em>Avena sativa</em> L.）种质集合为适应性变异、关联作图与性状部署提供发现资源》。**"File S1"**与**"File S2"**包含了关联作图所用的群体元数据及表型（环境）数据，该研究的作图结果列于**"File S3"**。**"Rahman_et_al_2024_Metadata.geojson"**为本次研究中调研的OLD面板种质的地理信息文件。**"SBATCH_RUN_nsgc_deepvariant_glsnexus.sh"**与**"RUN_nsgc_deepvariant_glsnexus.sh"**为SciNet集群中基于GBS比对结果开展变异检测与过滤的脚本。重要提示：请勿将容器拉取至$HOME目录，请将其置于主路径下以供SciNet集群使用。Google DeepVariant可生成镜像文件"deepvariant_1.6.0.sif"（拉取命令：singularity pull docker://google/deepvariant:1.6.0）；GLNexus可生成镜像文件"glnexus_v1.4.1.sif"（拉取命令：singularity pull docker://google/glnexus:1.4.1）。**"DeepVariantWGS.yml"**为运行GLNexus的配置文件。**"nsgc.gdv.gln.cohort.clean.maf01maxmiss75diploid.beagle_sorted_filt.gt.vcf"**为本研究所述的最终基因型文件。