Pearl River estuary microbiome and virome

Project description: Deep metagenomic sequencing on microbial and viral communities in surface waters of the Pearl River estuary (PRE), a typical subtropical. Data description: Data for assembly, MAGs, viral like contigs and populations generated using the PRE microbial metagenomic data sets - data includes:PRET1608S??F00_idba-ud_final.fna.gz: the contigs generated from virome(<0.2 μm) (5 files).PRET1608S??F0{2/7}_megahit_final.fna.gz: the contigs generated from cellular metagenome(0.2-0.7 μm and 0.7-2.7μm) (10 files).PRET1608S??F0{2/7}_MAGs.tar.gz: MAGs with ≥ 50% completeness and ≤ 10% contamination of each metagenome. PRE_all_dereplicated_MAGs.tar.gz: 1,205 non-redundant prokaryotic genomes with ≥ 50% completeness and ≤ 10% contamination. PRE_viral_contigs.fasta: Putative viral contigs identified from contigs of all the three size fractions in PRE (1 file).PRE_viral_contigs_95-80.fna: Viral populations based on 95% nucleotide identity and 80% of the genome coverage criterion (1 file).Table1-SingleCopyMarkers.xlsx: The information of 122 archaeal single-copy marker proteins and 120 bacterial single-copy marker proteins were used to infer the maximum likelihood trees of archaeal and bacterial phylogenetic trees, respectively (1 file). Table2-MAGsGTDBdatabaseTaxonomicClassification.xlsx: Taxonomic classification of the final MAGs conducted by applying GTDB-tk (v1.4.0) based on the GTDB Release 202 (1 file).Table3-ViralPopulationQualitySummary.xlsx: Summary of the completeness and quality of the identified viral populations (1 file). Table4-ViralPopulationTaxonomy.xlsx: Taxonomic classification of viral populations (1 file).File1-PRE_archaea.trimmed.concat.alignment & File2-PRE_bacteria.trimmed.concat.alignment: The concatenated alignment for further phylogenomic analysis (2 files).File3-PRE_archaea.trimmed.concat.newick & File4-PRE_bacteria.trimmed.concat.newick: The genome trees (2 files). File5-PRE_archaea.tree.iTOL.labels.txt & File6-PRE_bacteria.tree.iTOL.labels.txt: The iTOL annotation file of the genome trees (2 files).