Top Pathways upregulated within each CD8 T cell cluster of LCMV-13 infected mice at 8dpi.

Gene expression data exported from Loupe for each CD8 T cell cluster, as identified in Fig 2, was uploaded to iPathway analysis to determine pathways which were significantly associated with those gene sets. Table shows the top 3 pathways for each indicated cluster, the count of differentially expressed (DE) genes that were expressed in each cluster associated with the pathways, count all genes in that pathway, and the p-value associating that pathway with the gene expression data set.