Additional file 1: of Study of spontaneous mutations in the transmission of poplar chloroplast genomes from mother to offspring

Table S1. The ratio of split-reads mapped to each cpDNA of six Populus species using Bowtie and BWA. Table S2. The genome size of P. trichocarpa cpDNA was estimated using each of twelve sets of simulated reads (60 bp–10 k, 60 bp–100 k, 60 bp–1 M, 60 bp–10 M, 80 bp–10 k, 80 bp–100 k, 80 bp–1 M, 80 bp–10 M, 100 bp–10 k, 100 bp–100 k, 100 bp–1 M and 100 bp–10 M). Table S3. Basic statistics of 13 assemblies used for further analyses. Table S4. The cpDNA and gDNA ratios of read datasets for the three poplar clones I45, I69 and NL895. Table S5. The positions, reference and alternative base, types (Replace|Insert|Delete) and the genotypes of all 401 variants identified in the three poplar clones. (XLSX 31 kb)