Rhodelphis limneticus genome assemblies and predicted protein sequenecs

This folder contains R. limneticus genomic scaffolds from mixed culture (including the prey kinetoplastid Parabodo caudatus and bacteria) and manually isolated cells amplified by whole genome amplification (WGA). In each case, the assembly is based on a combination of Illumina HiSeq X and Oxford Nanopore minION reads that were assembled using SPAdes. Contaminant contigs were identified and removed using a combination of megablast and Autometa. For the WGA dataset, proteins were predicted using braker2; protein sequences are provided with soft repeat masking and no repeat masking.