Single-cell chromatin conformation capture of diploid cells by Dip-C (analyzed with the hickit package)

To reconstruct the 3D genomes of single diploid human and mouse cells, we performed single-cell chromatin conformation capture by a novel method, Dip-C, on human cells. This submission is similar to our submission GSE117109, but analyzed the data with the hickit package instead of the dip-c package. The raw data for the samples in this series are identical to the related samples in GSE117109. There are links between the original and re-analyzed data on the sample pages. We performed Dip-C on 17 GM12878 human lymphoblastoid cells and 18 peripheral blood mononuclear cells (PBMCs) from a male human donor, and analyzed the data with the hickit package. BioProject for the data is PRJNA473369.