KMCP Manuscript Data

# KMCP: accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping ## 1.code-and-documents This directory contains the source code, executable binaries, and documents of KMCP,<br> which are also hosted at Github: https://github.com/shenwei356/kmcp . Databases, usage, and tutorials of KMCP are also available at https://bioinf.shenwei.me/kmcp/. - [Installation](https://bioinf.shenwei.me/kmcp/download)<br> - [Databases](https://bioinf.shenwei.me/kmcp/database)<br> - Tutorials<br> - [Taxonomic profiling](https://bioinf.shenwei.me/kmcp/tutorial/profiling)<br> - [Sequence and genome searching](https://bioinf.shenwei.me/kmcp/tutorial/searching)<br> - [Usage](https://bioinf.shenwei.me/kmcp/usage)<br> - [Benchmarks](https://bioinf.shenwei.me/kmcp/benchmark)<br> - [FAQs](https://bioinf.shenwei.me/kmcp/faq) ## 2.databases This directory contains the building steps and reference genome accessions for<br> KMCP databases used in the manuscript. cami2 Databases used in benchmarks on CAMI2 mouse gut datasets<br> kmcp Databases used in other benchmarks<br> <br> ## 3.figures Each subdirectory contains steps to run the benchmark (`README.md`), steps for plotting (`README-plot.md`),<br> benchmark results, and figures.<br>