Example Datasets for AlignCell

This record provides the example datasets used for code functionality testing of AlignCell. These datasets correspond to the test scripts available in the AlignCell repository (https://github.com/DZH-Neuron/AlignCell). To run the example workflows, please place the downloaded files in the test/example directory as described in the repository documentation. File Descriptions: testis_merge_matrix.csv and testis_merge_type.csv are used to test the scripts e01_train_model.ipynb and e02_integrate_across_platforms.ipynb. Multi_P2_data.csv and Multi_P2_type.csv are used to test the script e03_integrate_across_omics.ipynb. Baron_mouse.h5ad, Baron_human.h5ad, and count.txt are used to test the script e04_integrate_across_species.ipynb. Note that count.txt is the matrix after converting mouse genes to their human homologs. heart_count_dat.txt and heart_type.txt are used to test the scripts e05_discovery_gene.ipynb and e06_biological_label_transfer.ipynb.