MOESM2 of Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions

Additional file 2: Table S1. List of putative duplicated loci: heterozygous RAD SNPs detected in at least two doubled haploid control individuals (DH controls), each from different rainbow trout isogenic lines. Table S2. Overall survival and weight of fish of the QTL family at the end of the immersion and injection infectious challenges. Description: Data were recorded for 49 and 35 days for the immersion and injection challenges, respectively. Table S3. Genetic linkage map constructed with the F2 progeny. Description: The marker at one position used in the QTL detection is shown in red bold. Tables S4. SNP allele and position for the 2130 markers used in the QTL detection. Description: SNP position is given in bp from the first bp of the read. Table S5. All significant (P ≤ 0.01 at the chromosome wide level) detected QTL, error-I rejection threshold at chromosome and genome-wide levels calculated for each QTL, flanking markers at each QTL, with name and position on the linkage map (cM). Table S6. List of 49 up- and down- regulated genes after F. psychrophilum infection in two rainbow trout isogenic lines in [46] located in the QTL associated with resistance traits identified in this study. Table S7. Reads of the 9654 polymorphic loci used in the linkage map and QTL detection.